boot/net: rename Boot.S files, clarify EEPROM implication, and prep UDP read

- Renamed Boot.S → BootNetStartup.S and SysChk/Boot.S → SysChkStartup.S for clarity
- Replaced BOOTNET_INTERNET_HEADER.ImpliesEEPROM with ImpliesProgram to better reflect the generic reprogramming intent
- Introduced `bootnet_read_udp_packet()` stub for future UDP packet parsing from bootnet.json
- Minor alignment and comment fixes in various headers (CoreBoot, EPM, Json)
- Updated HalPagingMgr to use PageStore instead of NE_PAGE_STORE
- Boot time now prints cycles since start; triggered fs_init_nefs() earlier during HAL init
- Prep for extended MBCI and master structure support in COREBOOT_LINEAR_EXEC
- Numerous cleanups across DMA, NewKit, and Json parsing to prep for extended patching and block-level bootstrap

This lays groundwork for richer NetBoot infrastructure in NeKernel and aligns naming and structure conventions across subsystems.

Signed-off-by: Amlal El Mahrouss <amlal@nekernel.org>

4 files changed, 19 insertions, 19 deletions

diff --git a/dev/kernel/HALKit/AMD64/HalKernelMain.cc b/dev/kernel/HALKit/AMD64/HalKernelMain.cc
index 0ebba546..0d58bb8a 100644
--- a/dev/kernel/HALKit/AMD64/HalKernelMain.cc
+++ b/dev/kernel/HALKit/AMD64/HalKernelMain.cc
@@ -98,6 +98,8 @@ EXTERN_C Kernel::Void hal_real_init(Kernel::Void) noexcept
 
 	kout << "Boot Time: " << Kernel::number(kEndTim - kStartTim) << kendl;
 
+	Kernel::NeFS::fs_init_nefs();
+
 	Kernel::HAL::mp_get_cores(kHandoverHeader->f_HardwareTables.f_VendorPtr);
 
 	Kernel::HAL::Register64 idt_reg;
diff --git a/dev/kernel/HALKit/AMD64/HalPagingMgrAMD64.cc b/dev/kernel/HALKit/AMD64/HalPagingMgrAMD64.cc
index 5819f1d9..63796393 100644
--- a/dev/kernel/HALKit/AMD64/HalPagingMgrAMD64.cc
+++ b/dev/kernel/HALKit/AMD64/HalPagingMgrAMD64.cc
@@ -17,7 +17,7 @@ namespace Kernel::HAL
 	/***********************************************************************************/
 	/// \brief Page store type.
 	/***********************************************************************************/
-	struct NE_PAGE_STORE final
+	struct PageStore final
 	{
 		struct
 		{
@@ -43,9 +43,9 @@ namespace Kernel::HAL
 			return pte && pte->User;
 		}
 
-		static NE_PAGE_STORE& The()
+		static PageStore& The()
 		{
-			static NE_PAGE_STORE the;
+			static PageStore the;
 			return the;
 		}
 	};
@@ -60,7 +60,7 @@ namespace Kernel::HAL
 
 		UInt64 cr3 = (UInt64)hal_read_cr3();
 
-		NE_PAGE_STORE& page_store = NE_PAGE_STORE::The();
+		PageStore& page_store = PageStore::The();
 
 		// Extract the indices from the virtual address
 		UInt64 pml4_index = ((UIntPtr)virtual_address >> 39) & kPmlIndexMask;
@@ -123,7 +123,7 @@ namespace Kernel::HAL
 
 		UInt64 cr3 = (UInt64)hal_read_cr3();
 
-		NE_PAGE_STORE& page_store = NE_PAGE_STORE::The();
+		PageStore& page_store = PageStore::The();
 
 		// Extract the indices from the virtual address
 		UInt64 pml4_index = ((UIntPtr)virtual_address >> 39) & kPmlIndexMask;
@@ -189,7 +189,7 @@ namespace Kernel::HAL
 
 		mmi_page_status(pt_entry);
 
-		NE_PAGE_STORE& page_store = NE_PAGE_STORE::The();
+		PageStore& page_store = PageStore::The();
 
 		// Update Internal store.
 
diff --git a/dev/kernel/HALKit/AMD64/PCI/DMA.cc b/dev/kernel/HALKit/AMD64/PCI/DMA.cc
index 747fab94..33cff13e 100644
--- a/dev/kernel/HALKit/AMD64/PCI/DMA.cc
+++ b/dev/kernel/HALKit/AMD64/PCI/DMA.cc
@@ -5,6 +5,7 @@
 ------------------------------------------- */
 
 #include <KernelKit/PCI/DMA.h>
+#include <ArchKit/ArchKit.h>
 
 namespace Kernel
 {
@@ -26,37 +27,34 @@ namespace Kernel
 		if (offset == 0)
 			return false;
 
-		kout << "[DMAWrapper::IsIn] Checking offset..\n";
+		kout << "[DMAWrapper::IsIn] Checking offset...\r";
 		return reinterpret_cast<UIntPtr>(this->fAddress) >= offset;
 	}
 
 	bool DMAWrapper::Write(const UIntPtr& bit, const UInt32& offset)
 	{
-		kout << "[DMAWrapper::Read] Checking this->fAddress..\n";
+		kout << "[DMAWrapper::Read] Checking this->fAddress...\r";
 
 		if (!this->fAddress)
 			return false;
 
-		kout << "[DMAWrapper::Write] Writing at address..\n";
+		kout << "[DMAWrapper::Write] Writing at address: " << hex_number(reinterpret_cast<UIntPtr>(this->fAddress) + offset) << kendl;
 
-		auto addr =
-			(volatile UIntPtr*)(reinterpret_cast<UIntPtr>(this->fAddress) + offset);
-		*addr = bit;
+		ke_dma_write<UInt32>(reinterpret_cast<UIntPtr>(this->fAddress), offset, bit);
 
 		return true;
 	}
 
 	UIntPtr DMAWrapper::Read(const UInt32& offset)
 	{
-		kout << "[DMAWrapper::Read] Checking this->fAddress..\n";
+		kout << "[DMAWrapper::Read] Checking this->fAddress...\r";
 
 		if (!this->fAddress)
-			return 0;
+			return ~0;
 
-		kout << "[DMAWrapper::Read] Reading this->fAddress..\n";
+		kout << "[DMAWrapper::Write] Writing at address: " << hex_number(reinterpret_cast<UIntPtr>(this->fAddress) + offset) << kendl;
 
-		return *(volatile UIntPtr*)(reinterpret_cast<UIntPtr>(this->fAddress) + offset);
-		;
+		return ke_dma_read<UInt32>(reinterpret_cast<UIntPtr>(this->fAddress), offset);
 	}
 
 	UIntPtr DMAWrapper::operator[](const UIntPtr& offset)
@@ -70,7 +68,7 @@ namespace Kernel
 			return {};
 
 		OwnPtr<IOBuf<Char*>> dmaOwnPtr =
-			make_ptr<IOBuf<Char*>, char*>(reinterpret_cast<char*>(dma->fAddress));
+			mm_make_own_ptr<IOBuf<Char*>, char*>(reinterpret_cast<char*>(dma->fAddress));
 
 		if (!dmaOwnPtr)
 			return {};
diff --git a/dev/kernel/HALKit/AMD64/Storage/DMA+Generic.cc b/dev/kernel/HALKit/AMD64/Storage/DMA+Generic.cc
index 300b959f..5aabf144 100644
--- a/dev/kernel/HALKit/AMD64/Storage/DMA+Generic.cc
+++ b/dev/kernel/HALKit/AMD64/Storage/DMA+Generic.cc
@@ -76,7 +76,7 @@ Boolean drv_std_init(UInt16 Bus, UInt8 Drive, UInt16& OutBus, UInt8& OutMaster)
 		/// IDE interface
 		if (kATADevice.Subclass() == 0x01)
 		{
-		
+
 			break;
 		}
 	}